STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potF-IIPutrescine-binding periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; transporter. (362 aa)    
Predicted Functional Partners:
spuH
Spermidine/putrescine ABC transporter - permease subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
  
 0.979
PP_0414
Polyamine ABC transporter, permease protein.
  
 0.960
PP_3816
Polyamine ABC transporter, permease protein.
  
 0.923
ydcV
Polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
  
 0.873
spuG
Spermidine/putrescine ABC transporter - inner membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
  
 0.867
spuF
Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.858
ptxB
Phosphonate transport system-binding protein; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Phosphorus compounds.
      
 0.835
PP_4849
Putative DnaK protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.835
PP_3815
Polyamine ABC transporter, permease protein.
  
 0.834
PP_3146
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.786
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.