Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3156Universal stress protein family. (296 aa)    
Predicted Functional Partners:
PP_2132
Universal stress protein.
   
  
 0.637
oprG
Outer membrane protein OprG.
 
  
 0.544
PP_3157
Inositol monophosphatase family protein.
  
    0.543
PP_0973
Nucleoid-associated protein PP_0973.
  
     0.528
ygiF
Putative thiamine triphosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
  
     0.508
PP_2852
Putative Sulfatase domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.463
yrfG
Purine nucleotidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.461
adhP
Short-chain alcohol dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Anaerobic.
   
    0.452
PP_1775
Metallo-beta-lactamase family protein.
  
    0.451
PP_3291
Metallo-beta-lactamase family protein.
  
    0.451
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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