Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3160Homologs of previously reported genes of unknown function. (313 aa)    
Predicted Functional Partners:
PP_1887
Homologs of previously reported genes of unknown function.
     0.870
benB
Benzoate 1,2-dioxygenase subunit beta; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
  
    0.556
benR
BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism.
       0.550
benA
Benzoate 1,2-dioxygenase subunit alpha; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
       0.548
PP_4924
Serine protease, subtilase family.
 
  
 0.518
PP_1449
Homologs of previously reported genes of unknown function.
 
   
 0.446
PP_3142
Putative Sugar transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.428
benC
Benzoate 1,2-dioxygenase electron transfer component; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
  
    0.424
PP_4312
Homologs of previously reported genes of unknown function.
  
     0.416
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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