STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3169Homologs of previously reported genes of unknown function. (359 aa)    
Predicted Functional Partners:
eamA
O-acetylserine/cysteine export transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
      
 0.737
secE
Sec translocation complex - SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.
      
 0.647
PP_3170
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.582
nicP-I
Porin-like protein; Function experimentally demonstrated in the studied strain; transporter.
       0.563
bamA-II
Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.558
bamA-I
Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.556
PP_3198
Ferredoxin, 2Fe-2S.
   
  
 0.529
benE-II
Benzoate transport protein; Function of strongly homologous gene; transporter; Energy metabolism.
 
    0.520
PP_1535
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.500
PP_3581
Homologs of previously reported genes of unknown function.
      
 0.487
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.