Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3169Homologs of previously reported genes of unknown function. (359 aa)    
Predicted Functional Partners:
PP_3170
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.580
nicP-I
Porin-like protein; Function experimentally demonstrated in the studied strain; transporter.
       0.563
benE-II
Benzoate transport protein; Function of strongly homologous gene; transporter; Energy metabolism.
 
     0.519
PP_1845
Enoyl-CoA hydratase/isomerase family protein.
       0.488
arfB
peptidyl-tRNA hydrolase, ribosome rescue factor; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknown function.
       0.488
PP_1487
Homologs of previously reported genes of unknown function.
  
     0.443
PP_3171
Homologs of previously reported genes of unknown function.
       0.411
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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