STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3194Homologs of previously reported genes of unknown function. (447 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase; Function experimentally demonstrated in the studied strain; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the PAL/histidase family.
 
  
 0.822
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.816
PP_3193
Homologs of previously reported genes of unknown function.
  
    0.793
hutG
N-formylglutamate deformylase; Function experimentally demonstrated in the studied strain; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
  
 0.612
opuA
Glycine betaine ABC transporter, ATPase/permease fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
  
    0.490
PP_3195
Homologs of previously reported genes of unknown function.
  
    0.488
speB
Agmatinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Polyamine biosynthesis; Belongs to the arginase family.
  
  
 0.446
PP_4523
Putative Agmatinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the arginase family.
  
  
 0.446
PP_3192
Homologs of previously reported genes of unknown function.
  
    0.438
PP_1954
Homologs of previously reported genes of unknown function.
  
    0.428
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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