Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3196Nodulation protein d1; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
PP_3195
Homologs of previously reported genes of unknown function.
 
    0.827
PP_3197
Glyoxalase family protein.
 
     0.723
PP_3207
Putative Cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.643
PP_3199
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.583
PP_3203
Major facilitator family transporter.
 
    0.556
PP_3198
Ferredoxin, 2Fe-2S.
 
     0.493
PP_3205
Fumarylacetoacetate hydrolase family protein.
 
     0.412
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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