Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3203Major facilitator family transporter. (396 aa)    
Predicted Functional Partners:
PP_3207
Putative Cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.794
PP_3202
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.773
PP_3204
Homologs of previously reported genes of unknown function.
 
    0.763
PP_3205
Fumarylacetoacetate hydrolase family protein.
 
     0.751
PP_3201
BNR domain protein.
       0.746
PP_3199
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.732
PP_3195
Homologs of previously reported genes of unknown function.
 
    0.691
PP_3197
Glyoxalase family protein.
 
     0.627
PP_3200
Homologs of previously reported genes of unknown function.
 
     0.625
PP_3206
Homologs of previously reported genes of unknown function.
  
    0.602
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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