Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3207Putative Cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (260 aa)    
Predicted Functional Partners:
PP_3204
Homologs of previously reported genes of unknown function.
 
  
 0.954
PP_3206
Homologs of previously reported genes of unknown function.
 
     0.920
PP_3205
Fumarylacetoacetate hydrolase family protein.
 
     0.913
paxB
Toxin secretion ATP-binding protein.
      
 0.851
PP_3195
Homologs of previously reported genes of unknown function.
 
  
 0.842
PP_3197
Glyoxalase family protein.
 
     0.840
PP_3199
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.827
ppnP
Conserved protein of unknown function, UPF0345 family; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
      
 0.816
PP_3203
Major facilitator family transporter.
 
    0.794
PP_0303
Dehydrocarnitine cleavage enzyme; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
  
  
 0.690
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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