STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3213ABC transporter, periplasmic binding component-related protein. (342 aa)    
Predicted Functional Partners:
PP_3210
ABC transporter, permease protein.
 
  
 0.933
PP_3211
ABC transporter, ATP-binding protein.
 
  
 0.893
PP_3212
Rieske 2Fe-2S family protein.
 
    0.824
PP_3209
Isoxanthopterin deaminase.
 
    0.565
PP_0172
ABC transporter, permease protein.
 
  
 0.520
ssuC
Aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.
 
  
 0.517
ssuE
NAD(P)H-dependent FMN reductase subunit; Probably forms a two-component reduced flavin mononucleotide- dependent monooxygenase by binding to SsuD. Required for growth on aliphatic sulfonates or methionine but not arylsulfonates (By similarity); Belongs to the SsuE family.
  
    0.484
msuE
FMN reductase (NADPH); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Sulfur metabolism.
  
    0.484
PP_3635
Putative Sulfonate ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.481
PP_0208
Putative Nitrate ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.478
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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