STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3223ABC transporter, periplasmic binding protein. (539 aa)    
Predicted Functional Partners:
PP_3221
ABC transporter, permease protein.
 
 0.996
PP_3222
ABC transporter, permease protein.
 0.996
PP_3220
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.990
PP_4454
Putative Opine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.984
gsiC
Glutathione ABC transporter permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 0.984
gsiA
Glutathione ABC transporter ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins; Belongs to the ABC transporter superfamily.
 
 
 0.960
PP_4458
Putative Opine ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 
0.929
dppA-IV
Periplasmic dipeptide transport protein; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
  
  
 
0.927
nikC
Nickel ABC transporter permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
 
 
 0.855
dppB
Dipeptide ABC transporter - putative membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 0.854
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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