STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3227Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
PP_1028
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.774
PP_2210
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.768
ynfL
Putative DNA-binding transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatoryfunctions : DNA interactions; Belongs to the LysR transcriptional regulatory family.
  
     0.768
PP_4464
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.765
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.760
PP_3395
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.758
PP_4664
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.758
PP_5348
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.756
gllR
HTH-type transcriptional regulator GalR; Transcriptional regulator for the galBCD and galTAP operons, encoding genes of the gallate degradation pathway.
  
    0.755
catR
HTH-type transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism; Belongs to the LysR transcriptional regulatory family.
  
     0.736
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.