STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgtCMagnesium transporter, MgtC family. (237 aa)    
Predicted Functional Partners:
PP_4261
Cation-transporting P-type ATPase; Function of strongly homologous gene; transporter; Energymetabolism : Aerobic.
     
 0.867
PP_0947
Homologs of previously reported genes of unknown function.
     
 0.863
PP_1836
Putative metal transporter, ZIP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
     
 0.863
mgtA
Magnesium transporter, ATP-dependent; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energymetabolism : ATP-proton motive force interconversion.
 
 
 0.810
mvaB
Hydroxymethylglutaryl-CoA lyase.
      
 0.741
PP_3243
Acetyltransferase, GNAT family.
       0.738
cadA-II
Cadmium translocating P-type ATPase; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
     
 0.570
PP_0756
Homologs of previously reported genes of unknown function.
      
 0.547
PP_3245
Homologs of previously reported genes of unknown function.
  
    0.541
cadA-I
Cadmium translocating P-type ATPase; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
     
 0.517
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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