STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3249Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (303 aa)    
Predicted Functional Partners:
PP_3250
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.952
metH
Cobalamin-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.574
PP_3248
Dyp-type peroxidase family protein.
  
    0.558
PP_4932
Putative D-arabinose 1-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
 
 0.516
PP_5593
Homologs of previously reported genes of unknown function.
  
    0.502
yeaG
Protein kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknown function.
   
    0.469
PP_3253
Carboxylate-amine ligase PP_3253; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.467
yajO
2-carboxybenzaldehyde reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
 
 
0.425
PP_3247
Transporter, bile acid/Na+ symporter family.
  
  
 0.419
PP_1644
NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family.
 
  
 0.418
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.