STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_3249Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (303 aa)    
Predicted Functional Partners:
PP_3250
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.967
PP_3248
Dyp-type peroxidase family protein.
  
  
 0.567
PP_4932
Putative D-arabinose 1-dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
 
 0.520
PP_5593
Homologs of previously reported genes of unknown function.
  
    0.502
yeaG
Protein kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknown function.
   
    0.474
PP_3253
Carboxylate-amine ligase PP_3253; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.472
PP_1816
Alcohol dehydrogenase, zinc-containing.
   
 
 0.438
curA
NADPH-dependent curcumin/dihydrocurcumin reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
   
 
 0.438
PP_4969
Homologs of previously reported genes of unknown function.
   
    0.412
PP_3247
Transporter, bile acid/Na+ symporter family.
  
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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