STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3257Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (199 aa)    
Predicted Functional Partners:
PP_3258
Homologs of previously reported genes of unknown function.
    0.994
PP_3256
Glycosyl transferase, group 2 family protein.
    0.980
PP_3259
Acyl-CoA dehydrogenase-related protein.
    0.980
ligD
DNA ligase D; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
  
    0.703
citN
Citrate transporter.
  
     0.477
yraO
Uncharacterized transporter YraO.
  
     0.463
PP_3261
Homologs of previously reported genes of unknown function.
  
    0.445
PP_2013
Homologs of previously reported genes of unknown function.
   
   0.443
PP_2343
Homologs of previously reported genes of unknown function.
   
   0.443
PP_3262
Putative Metallothionein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.434
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.