Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_3257Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (199 aa)    
Predicted Functional Partners:
PP_3258
Homologs of previously reported genes of unknown function.
    0.994
PP_3256
Glycosyl transferase, group 2 family protein.
  
 0.986
PP_3259
Acyl-CoA dehydrogenase-related protein.
    0.986
ligD
DNA ligase D; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
  
    0.745
coq
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 0.577
citN
Citrate transporter.
  
     0.477
yraO
Uncharacterized transporter YraO.
  
     0.463
PP_3261
Homologs of previously reported genes of unknown function.
  
    0.449
PP_3262
Putative Metallothionein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.437
PP_5297
Putative Amino acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
  0.434
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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