STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaKPhenylacetic acid-specific porin; Function experimentally demonstrated in the studied strain; transporter; Transportandbindingproteins : Porins. (417 aa)    
Predicted Functional Partners:
paaZ
oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
  
  
 0.878
paaB
Ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit; Function of homologous gene experimentally demonstrated in an other organism; putative enzyme; Energy metabolism.
  
  
 0.797
paaI
hydroxyphenylacetyl-CoA thioesterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
     
 0.788
paaA
Ring 1,2-phenylacetyl-CoA epoxidase alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
  
  
 0.782
paaY
Detoxifying thioesterase of the phenylacetate degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
     
 0.765
paaX
DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA); Function of homologous gene experimentally demonstrated in an other organism; regulator; Energy metabolism.
     
 0.736
actP-III
Acetate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Carbohydrates, organic alcohols, and acids; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.735
PP_3273
Homologs of previously reported genes of unknown function.
  
    0.731
PP_1948
Benzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  
 0.643
paaK
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 0.608
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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