STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaKPhenylacetic acid-specific porin; Function experimentally demonstrated in the studied strain; transporter; Transportandbindingproteins : Porins. (417 aa)    
Predicted Functional Partners:
paaZ
oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
  
  
 0.845
paaB
Ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit; Function of homologous gene experimentally demonstrated in an other organism; putative enzyme; Energy metabolism.
     
 0.796
paaX
DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA); Function of homologous gene experimentally demonstrated in an other organism; regulator; Energy metabolism.
     
 0.763
paaY
Detoxifying thioesterase of the phenylacetate degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
     
 0.748
actP-III
Acetate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Carbohydrates, organic alcohols, and acids; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.734
PP_3273
Homologs of previously reported genes of unknown function.
       0.730
paaA
Ring 1,2-phenylacetyl-CoA epoxidase alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
  
  
 0.718
paaI
hydroxyphenylacetyl-CoA thioesterase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
     
 0.698
PP_1948
Benzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.634
benK
Benzoate MFS transporter; Function of strongly homologous gene; transporter; Energy metabolism.
      
 0.633
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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