Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3289Acetyltransferase, GNAT family. (182 aa)    
Predicted Functional Partners:
PP_3724
Putative Acyl-CoA synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.969
PP_3290
Universal stress protein family.
  
  
 0.847
PP_3292
Homologs of previously reported genes of unknown function.
  
  
 0.842
fnrB
Transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family; Function experimentally demonstrated in the studied strain; regulator.
  
  
 0.825
fnrC
Transcriptional regulator with 4Fe-4S cluster; Function experimentally demonstrated in the studied strain; regulator.
 
  
 0.820
PP_3237
Universal stress protein family.
  
  
 0.792
ccoO-I
Cytochrome c oxidase subunit, cbb3-type; Function of strongly homologous gene; enzyme.
   
  
 0.772
PP_3294
Universal stress protein family.
  
  
 0.749
PP_3238
Putative Transcriptional regulator PyrR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.743
PP_3230
Phosphoribosyl transferase domain protein.
      
 0.741
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.