STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3290Universal stress protein family. (308 aa)    
Predicted Functional Partners:
PP_3292
Homologs of previously reported genes of unknown function.
     
 0.840
PP_3289
Acetyltransferase, GNAT family.
  
  
 0.839
PP_3291
Metallo-beta-lactamase family protein.
  
    0.802
PP_2187
Universal stress protein family.
  
    0.775
PP_2132
Universal stress protein.
   
  
 0.702
PP_3232
Acetyltransferase, GNAT family.
  
  
 0.688
PP_3230
Phosphoribosyl transferase domain protein.
  
  
 0.670
PP_3238
Putative Transcriptional regulator PyrR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.648
PP_3234
Heat shock protein, HSP20 family; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.636
fnrB
Transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family; Function experimentally demonstrated in the studied strain; regulator.
  
  
 0.560
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.