STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3323CobW/P47K family protein. (203 aa)    
Predicted Functional Partners:
folEB
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
 
  
 0.948
PP_5360
Homologs of previously reported genes of unknown function.
  
 0.944
PP_5359
CobW/P47K family protein.
 
  
0.687
hemBB
Porphobilinogen synthase (delta-aminolevulinic acid dehydratase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ALAD family.
     
 0.643
PP_3321
Homologs of previously reported genes of unknown function.
       0.623
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.547
PP_5362
Homologs of previously reported genes of unknown function.
  
  
 0.511
PP_0507
Putative ABC efflux transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.499
PP_3320
Homologs of previously reported genes of unknown function.
     
 0.498
PP_0508
Homologs of previously reported genes of unknown function.
  
  
 0.493
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.