Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_3331Homologs of previously reported genes of unknown function. (497 aa)    
Predicted Functional Partners:
PP_3332
Putative cytochrome c-type protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
     
 0.981
PP_4615
Homologs of previously reported genes of unknown function; Belongs to the PsiE family.
      
 0.970
PP_3330
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.947
PP_2420
Outer membrane ferric siderophore receptor.
 
    0.757
PP_5600
Homologs of previously reported genes of unknown function; Unknown function.
  
    0.692
PP_2561
Putative secreted hemolysin-type calcium-binding bacteriocin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Cellularprocesses : Toxin production and resistance.
  
    0.570
PP_3325
Putative Outer membrane ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    0.516
PP_0861
Outer membrane ferric siderophore receptor; Function of strongly homologous gene; receptor; Cellularprocesses : Adaptations to atypical conditions.
 
  
 0.424
PP_3329
Homologs of previously reported genes of unknown function.
       0.422
PP_3612
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor; Transport and binding proteins.
 
  
 0.414
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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