Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3348GGDEF domain protein. (381 aa)    
Predicted Functional Partners:
PP_3672
Homologs of previously reported genes of unknown function.
  
 0.980
PP_1718
Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
 0.926
pilH
Protein PilH.
 
 
    0.902
PP_3435
Homologs of previously reported genes of unknown function.
    0.843
PP_0131
Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.842
PP_4781
Sensor histidine kinase.
 
 
    0.711
PP_4959
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 
0.595
PP_2505
GAF domain/GGDEF domain protein.
   
0.574
PP_1154
Sensory box protein.
 
 
0.552
PP_3711
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 
0.544
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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