STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3383Gluconate 2-dehydrogenase flavoprotein subunit; Function experimentally demonstrated in the studied genus; enzyme; Energy metabolism. (594 aa)    
Predicted Functional Partners:
PP_3384
Gluconate 2-dehydrogenase gamma subunit; Function of strongly homologous gene; enzyme; Energy metabolism.
 
 0.999
PP_3382
Gluconate 2-dehydrogenase cytochrome c subunit; Function of strongly homologous gene; enzyme; Energy metabolism.
 
 0.998
PP_4232
Cytochrome c family protein.
 
 
 0.957
kguK
Putative 2-ketogluconokinase; Function experimentally demonstrated in the studied genus; putative enzyme; Energy metabolism.
   
 
 0.956
gnuK
D-gluconate kinase; Function experimentally demonstrated in the studied strain; enzyme.
     
 0.937
adhB
Alcohol dehydrogenase cytochrome c subunit.
 
 
 0.931
ghrB
2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Sugars; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
  0.903
PP_3247
Transporter, bile acid/Na+ symporter family.
      
 0.860
PP_3526
Transcriptional regulator, AraC family.
      
 0.860
PP_1269
Universal stress protein family.
  
   
 0.837
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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