STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgrG-IIType 6 secretion system protein; Function of strongly homologous gene; regulator. (725 aa)    
Predicted Functional Partners:
PP_3385
Homologs of previously reported genes of unknown function.
 
  
 0.958
hcpC-I
Hemolysin-coregulated protein; Function of strongly homologous gene; factor.
 
  
 0.957
hcpC-II
Hemolysin-coregulated protein; Function of strongly homologous gene; factor.
 
  
 0.957
PP_3090
OmpA domain protein.
 
  
 0.952
PP_2624
Homologs of previously reported genes of unknown function.
 
  
 0.864
PP_3088
Homologs of previously reported genes of unknown function.
 
  
 0.864
PP_4074
Homologs of previously reported genes of unknown function.
 
  
 0.864
PP_3100
Homologs of previously reported genes of unknown function.
 
  
 0.863
PP_2620
Homologs of previously reported genes of unknown function.
 
  
 0.861
PP_4078
Homologs of previously reported genes of unknown function.
 
  
 0.860
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.