STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_3398Putative Curli fiber surface-exposed nucleator CsgB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (157 aa)    
Predicted Functional Partners:
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
 
   
 0.944
csgG
Curli secretion and assembly complex lipoprotein; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Transport and binding proteins.
 
   
 0.869
csgF
Curli secretion and assembly outer membrane associated component; Function of homologous gene experimentally demonstrated in an other organism; putative membrane component; Transport and binding proteins.
 
   
 0.869
PP_3397
Homologs of previously reported genes of unknown function.
 
    0.779
PP_3396
Homologs of previously reported genes of unknown function.
  
    0.734
PP_0693
Homologs of previously reported genes of unknown function.
  
     0.719
PP_4775
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.557
PP_1072
Leucine-rich repeat domain protein.
  
     0.505
PP_3395
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.467
alkB
Alpha-ketoglutarate- and Fe(II)-dependent dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : Restriction/modification.
       0.445
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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