STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3404Homologs of previously reported genes of unknown function. (290 aa)    
Predicted Functional Partners:
PP_3405
Homologs of previously reported genes of unknown function.
  
    0.761
nicP-II
Porin-like protein; Probable transporter, possibly involved in the aerobic nicotinate degradation pathway; Belongs to the outer membrane porin (Opr) (TC 1.B.25) family.
  
     0.545
nicP-I
Porin-like protein; Function experimentally demonstrated in the studied strain; transporter.
  
    0.541
PP_3403
Putative Quercetin 2,3-dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the pirin family.
  
    0.535
PP_3390
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.524
PP_3406
Acetyltransferase, GNAT family.
  
    0.501
PP_3407
Homologs of previously reported genes of unknown function.
       0.498
galP-IV
Porin-like protein; Function experimentally demonstrated in the studied strain; transporter.
  
     0.483
PP_2058
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.479
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 0.477
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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