Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3411Homologs of previously reported genes of unknown function. (80 aa)    
Predicted Functional Partners:
cobM
Precorrin-4 C(11)-methyltransferase.
       0.668
cbtA
Cobalt transporter subunit A; Function of strongly homologous gene; transporter; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin.
       0.588
PP_3409
Putative Cobalamin biosynthesis protein cobE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.502
PP_1112
Homologs of previously reported genes of unknown function.
       0.488
PP_3504
Homologs of previously reported genes of unknown function.
       0.488
PP_2742
Homologs of previously reported genes of unknown function.
  
     0.460
PP_3412
DNA-binding response regulator, LuxR family.
  
    0.439
PP_3413
Sensor histidine kinase/response regulator.
       0.418
PP_4665
Homologs of previously reported genes of unknown function.
  
     0.405
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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