STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3420Sensor histidine kinase. (497 aa)    
Predicted Functional Partners:
PP_3419
Sigma-54 dependent transcriptional regulator/response regulator.
 
 
 0.910
bhbP
D-beta-hydroxybutyrate permease; Function of strongly homologous gene; transporter; Transport and binding proteins.
  
   
 0.857
PP_3009
Homologs of previously reported genes of unknown function.
   
  
 0.838
PP_2810
Homologs of previously reported genes of unknown function.
      
 0.836
PP_2813
BNR domain protein.
      
 0.834
PP_3656
Putative Aromatic compound-specific porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.833
PP_3484
Response regulator receiver protein.
  
   0.826
PP_4643
Xanthine/uracil permease family protein.
      
 0.822
PP_3833
Response regulator.
 
 
 0.784
PP_4824
Sensor histidine kinase/response regulator.
 
 
 0.782
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.