Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xcpSType II secretion pathway protein XcpS. (403 aa)    
Predicted Functional Partners:
xcpT
Type II secretion pathway protein XcpT.
 
  
 0.995
gspE
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
 
 
 0.979
xcpQ
Type II secretion pathway protein XcpQ.
 
  
 0.974
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
  
  
0.940
xcpU
Type II secretion pathway protein XcpU.
  
  
 0.931
PP_3483
Putative Type II secretion system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.921
PP_5190
Type II secretion system protein.
 
 
 0.921
xcpP
Type II secretion pathway protein XcpP.
  
  
 0.898
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.896
xcpY
Type II secretion pathway protein XcpY.
  
  
 0.894
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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