Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
mexFMultidrug efflux RND transporter MexF. (1059 aa)    
Predicted Functional Partners:
PP_3425
Efflux transporter RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.999
oprN
Multidrug efflux RND outer membrane protein OprN.
 0.999
oprJ
Outer membrane protein OprJ.
 
 0.964
mexC
Multidrug efflux RND membrane fusion protein MexC; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.963
PP_3455
Multidrug efflux RND membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.955
ttgA
Probable efflux pump periplasmic linker TtgA; Probable periplasmic linker protein component of the TtgABC efflux pump with unknown specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.951
ttgC
Probable efflux pump outer membrane protein TtgC; Probable outer membrane component of the TtgABC efflux pump with unknown specificity; Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 0.912
mdtA
Multidrug efflux transport system - putative membrane fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Cellularprocesses : Toxin production and resistance; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.883
PP_2069
Putative Multidrug efflux MFS outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.873
PP_1273
Putative Multidrug efflux MFS outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.862
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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