STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3432Homologs of previously reported genes of unknown function. (268 aa)    
Predicted Functional Partners:
PP_3413
Sensor histidine kinase/response regulator.
  
  
 0.566
PP_3430
Sensory box histidine kinase/response regulator.
  
 
 0.550
PP_2097
Sensory box protein.
  
 
 0.512
PP_3761
Sensor histidine kinase/response regulator.
  
  
 0.502
PP_3431
ThiJ/PfpI family protein.
  
    0.496
PP_0337
Sensory box protein.
  
 
 0.494
PP_3319
Sensory box protein/GGDEF domain protein.
  
 
 0.494
PP_4821
Putative Fis-like DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.
    
 
 0.484
PP_3728
Sensor histidine kinase/response regulator.
  
  
 0.474
gacS
Sensor protein GacS.
  
  
 0.471
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.