STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3444Glyoxalase family protein. (159 aa)    
Predicted Functional Partners:
PP_4556
Homologs of previously reported genes of unknown function.
    0.854
PP_3629
Homologs of previously reported genes of unknown function.
 
  
 0.766
PP_4554
Homologs of previously reported genes of unknown function.
     0.747
PP_3445
Homologs of previously reported genes of unknown function.
  
    0.699
PP_4553
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.577
PP_4555
Homologs of previously reported genes of unknown function.
 
    0.570
PP_2851
Homologs of previously reported genes of unknown function.
 
    0.528
PP_3443
Putative glyceraldehyde-3-phosphate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Entner-Doudoroff.
  
    0.519
PP_5245
Transcriptional regulator, AraC family.
 
    0.505
PP_2173
Transcriptional regulator, AraC family.
 
    0.449
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.