Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nfrBBacteriophage N4 receptor, inner membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Unknown function. (724 aa)    
Predicted Functional Partners:
PP_3451
Homologs of previously reported genes of unknown function.
     
 0.893
PP_3449
Homologs of previously reported genes of unknown function.
  
 
 0.866
PP_3450
Conserved protein of unknown function containing TPR repeat; Homologs of previously reported genes of unknown function; Unknown function.
  
 
 0.865
bcsA
Cellulose synthase and translocator subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
  
   
 0.790
PP_1567
Capsid protein.
      
 0.744
rffE
UDP-N-acetylglucosamine-2-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellenvelope : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
   
 0.710
mrpC
Putative K(+)/H(+) antiporter subunit C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.656
PP_3452
GGDEF domain protein.
  
  
 0.652
bcsB
Cellulose synthase and translocator subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
 
 0.550
PP_5073
Homologs of previously reported genes of unknown function.
  
    0.524
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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