Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_3451Homologs of previously reported genes of unknown function. (279 aa)    
Predicted Functional Partners:
nfrB
Bacteriophage N4 receptor, inner membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Unknown function.
     
 0.893
PP_3449
Homologs of previously reported genes of unknown function.
  
 
 0.826
PP_3450
Conserved protein of unknown function containing TPR repeat; Homologs of previously reported genes of unknown function; Unknown function.
   
 
 0.824
PP_0725
Conserved hypothetical TPR repeat protein; Homologs of previously reported genes of unknown function.
  
 
 0.779
PP_3452
GGDEF domain protein.
  
   0.645
rffE
UDP-N-acetylglucosamine-2-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellenvelope : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.521
PP_3447
Homologs of previously reported genes of unknown function.
  
    0.507
pycB
Pyruvate carboxylase subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
  
    0.454
PP_1622
Metallopeptidase, M23B subfamily; Function of strongly homologous gene; membrane component; Cell envelope.
  
  
 0.431
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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