Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mexBMultidrug resistance protein MexB. (1042 aa)    
Predicted Functional Partners:
PP_3455
Multidrug efflux RND membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.996
ttgA
Probable efflux pump periplasmic linker TtgA; Probable periplasmic linker protein component of the TtgABC efflux pump with unknown specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.991
ttgC
Probable efflux pump outer membrane protein TtgC; Probable outer membrane component of the TtgABC efflux pump with unknown specificity; Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 0.989
oprJ
Outer membrane protein OprJ.
 
 0.979
oprN
Multidrug efflux RND outer membrane protein OprN.
 
 0.973
mexC
Multidrug efflux RND membrane fusion protein MexC; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.967
ompQ
Outer membrane pyoverdine efflux protein; Function of strongly homologous gene; transporter; Transport and binding proteins.
 0.962
PP_0907
RND efflux membrane fusion protein-related protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.956
PP_3582
RND efflux transporter, outer membrane protein.
 0.945
PP_4923
Outer membrane efflux protein.
 
 0.931
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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