STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3464Homologs of previously reported genes of unknown function. (437 aa)    
Predicted Functional Partners:
peaB
Quinohemoprotein amine dehydrogenase modification protein; Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines.
 
     0.738
PP_5603
Putative FAD dependent oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
    0.736
PP_3466
Putative ABC efflux transporter, permease/ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.681
PP_2662
Homologs of previously reported genes of unknown function.
  
     0.671
PP_5604
Putative subtilisin-like serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
    0.650
peaE
Phenylacetaldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family.
 
     0.542
paaX
DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA); Function of homologous gene experimentally demonstrated in an other organism; regulator; Energy metabolism.
  
     0.506
PP_2597
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.422
PP_0497
Transcriptional regulator, Cro/CI family.
  
     0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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