STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csgGCurli secretion and assembly complex lipoprotein; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Transport and binding proteins. (282 aa)    
Predicted Functional Partners:
csgF
Curli secretion and assembly outer membrane associated component; Function of homologous gene experimentally demonstrated in an other organism; putative membrane component; Transport and binding proteins.
 
 
 0.999
PP_3474
Putative Curli fiber protein CsgE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.995
PP_3398
Putative Curli fiber surface-exposed nucleator CsgB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.869
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
 
  
 0.835
ydcU
Polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
      
 0.816
PP_3477
Putative secretion type II protein related to protein G; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; membrane component; Transport and binding proteins.
       0.815
lptE
Putative Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
      
 0.767
lolB
Outer-membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
      
 0.766
PP_3481
Homologs of previously reported genes of unknown function.
  
    0.752
PP_3476
Type II secretion system protein G.
  
    0.749
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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