STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3480Homologs of previously reported genes of unknown function. (187 aa)    
Predicted Functional Partners:
PP_3478
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial secretin family.
  
 
 0.895
pilN
Type IV pili biogenesis protein PilN.
  
 
 0.859
PP_3483
Putative Type II secretion system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.858
PP_3476
Type II secretion system protein G.
  
  
 0.822
PP_3475
Putative type II secretory pathway, pseudopilin pulG-related signal peptide protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure; Cellenvelope : Surface structures.
  
  
 0.821
PP_3477
Putative secretion type II protein related to protein G; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; membrane component; Transport and binding proteins.
  
  
 0.820
PP_3481
Homologs of previously reported genes of unknown function.
  
    0.812
PP_3482
Homologs of previously reported genes of unknown function.
       0.807
PP_5605
Homologs of previously reported genes of unknown function; Unknown function.
       0.807
csgF
Curli secretion and assembly outer membrane associated component; Function of homologous gene experimentally demonstrated in an other organism; putative membrane component; Transport and binding proteins.
  
    0.796
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.