STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PP_3483Putative Type II secretion system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (598 aa)    
Predicted Functional Partners:
PP_3476
Type II secretion system protein G.
 
 
 0.974
PP_3478
Putative Secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial secretin family.
 
 
 0.964
PP_3477
Putative secretion type II protein related to protein G; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; membrane component; Transport and binding proteins.
 
 
 0.947
PP_3475
Putative type II secretory pathway, pseudopilin pulG-related signal peptide protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure; Cellenvelope : Surface structures.
 
 
 0.942
pilC
Type 4 fimbrial assembly protein PilC.
 
 
 0.933
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
 
 0.933
PP_5190
Type II secretion system protein.
  
  
 
0.922
xcpS
Type II secretion pathway protein XcpS.
 
 
 0.921
gspE
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
  
 
0.913
pilD
Leader peptidase/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.909
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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