STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3485Homologs of previously reported genes of unknown function. (213 aa)    
Predicted Functional Partners:
PP_3486
Putative cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energy metabolism.
 
     0.878
mnxG
Manganese-oxidizing multicopper oxidase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
   0.855
PP_5606
Conserved exported protein of unknown function with YVTN beta-propeller repeat; Homologs of previously reported genes of unknown function; Unknown function.
 
     0.755
PP_3488
Sco1/SenC family protein.
 
 
   0.623
PP_3487
Homologs of previously reported genes of unknown function.
 
   0.610
PP_3421
Sensor histidine kinase.
  
 
 0.523
PP_3484
Response regulator receiver protein.
 
  
 0.507
PP_0347
Homologs of previously reported genes of unknown function.
  
 
  0.497
PP_3420
Sensor histidine kinase.
  
 
 0.479
PP_3476
Type II secretion system protein G.
 
     0.471
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.