STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3485Homologs of previously reported genes of unknown function. (213 aa)    
Predicted Functional Partners:
PP_3486
Putative cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energy metabolism.
 
     0.879
mnxG
Manganese-oxidizing multicopper oxidase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
 
 
   0.869
PP_5606
Conserved exported protein of unknown function with YVTN beta-propeller repeat; Homologs of previously reported genes of unknown function; Unknown function.
 
     0.778
PP_3488
Sco1/SenC family protein.
 
 
   0.679
PP_3487
Homologs of previously reported genes of unknown function.
 
   0.619
PP_3421
Sensor histidine kinase.
  
   0.517
PP_3484
Response regulator receiver protein.
 
    0.498
PP_0347
Homologs of previously reported genes of unknown function.
  
 
  0.490
PP_3420
Sensor histidine kinase.
  
   0.471
PP_3476
Type II secretion system protein G.
 
     0.470
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.