Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3505Homologs of previously reported genes of unknown function. (196 aa)    
Predicted Functional Partners:
PP_3506
Magnesium chelatase, subunit ChII.
 
 
 0.991
cobN
Aerobic cobaltochelatase subunit CobN.
 
 
 0.962
cobW
Protein CobW.
  
    0.778
PP_3763
Putative CobF protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.639
cobK
Precorrin-6x reductase.
 
    0.603
cobL
precorrin-6Y C(5,15)-methyltransferase; Function of strongly homologous gene; enzyme.
 
   
 0.580
cobH
Precorrin-8X methylmutase.
 
  
 0.528
cobB
Cobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
   
 0.478
cobJ
Precorrin-3B C17-methyltransferase.
 
   
 0.463
PP_1064
Hydrolase, alpha/beta fold family.
 
  
 0.450
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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