STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3513Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (284 aa)    
Predicted Functional Partners:
PP_3512
Homologs of previously reported genes of unknown function.
 
   
 0.835
PP_4464
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.683
PP_3366
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.681
PP_5479
Transcriptional regulator HTH, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.676
PP_5599
Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family.
  
     0.648
PP_3560
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.647
PP_2701
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.643
PP_3779
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.643
PP_4467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.638
PP_3121
Transcriptional regulator, LysR family; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatoryfunctions : DNA interactions; Belongs to the LysR transcriptional regulatory family.
  
     0.632
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.