STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmoA-IIDimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism. (454 aa)    
Predicted Functional Partners:
PP_3534
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.930
aruH
Arginine--pyruvate transaminase AruH.
 
    
 0.840
PP_3528
Putative ABC transporter, periplasmic substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.832
PP_0224
Monooxygenase, DszC family.
    0.812
sfnA
acyl-CoA dehydrogenase/oxidase family protein; Function experimentally demonstrated in the studied genus; enzyme; Cellular processes.
    0.806
PP_0223
Monooxygenase, DszC family.
    0.764
sfnB
Sulfur acquisition oxidoreductase, SfnB family; Function experimentally demonstrated in the studied genus; enzyme; Cellular processes.
    0.756
msuE
FMN reductase (NADPH); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Sulfur metabolism.
 
 
 0.747
PP_2772
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    0.745
yhgF
Putative transcriptional accessory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Transcription.
     
 0.744
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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