STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3534Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
dmoA-II
Dimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism.
   
  
 0.930
aruH
Arginine--pyruvate transaminase AruH.
   
  
 0.840
PP_3363
Putative thymidylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
   
  
 0.743
yhgF
Putative transcriptional accessory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Transcription.
      
 0.739
PP_2176
Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family.
  
     0.721
PP_4460
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.721
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.718
PP_0698
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.716
PP_4467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.711
PP_4494
Putative LysR-type transcriptional activator protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family.
  
     0.707
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.