STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrBMultidrug efflux transport system - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins; Belongs to the major facilitator superfamily. (511 aa)    
Predicted Functional Partners:
emrA
Multidrug efflux transport system - membrane fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
 0.997
PP_1976
HlyD family secretion protein.
 
 0.866
PP_2068
Putative Multidrug efflux MFS membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.865
PP_1272
Putative Multidrug efflux MFS membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.864
mdfA
Putative multidrug efflux MFS transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
   
 0.862
PP_3550
Putative Transcriptional regulator EmrR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.779
norM
Probable multidrug resistance protein NorM; Multidrug efflux pump; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
      
 0.773
tolC
Agglutination protein.
  
  
 0.711
mdtB
Multidrug efflux transport system - membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 
 0.660
PP_1152
Putative membrane fusion efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.620
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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