STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3559Glycine betaine ABC transporter (permease); Function of strongly homologous gene; transporter; Transportandbindingproteins : Amino acids, peptides and amines. (282 aa)    
Predicted Functional Partners:
PP_3558
Putative Amino acid transporter, periplasmic amino acid-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.999
betX
Choline / betaine / carnitine ABC transporter - substrate binding protein BetX; Function experimentally demonstrated in the studied genus; transporter.
 
 0.997
PP_0076
Putative choline betaine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.996
caiX
Carnitine uptake ABC transporter, periplasmic component; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
 
 0.996
cbcV
Choline / betaine / carnitine ABC transporter - ATP binding subunit; Function experimentally demonstrated in the studied genus; transporter; Aminoacidbiosynthesis : Glutamate family.
 0.995
PP_2775
Putative glycine betaine/L-proline ABC transporter, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 
 0.988
cbcX
Choline / betaine / carnitine ABC transporter - substrate binding protein; Function experimentally demonstrated in the studied genus; transporter.
 
 0.987
opuA
Glycine betaine ABC transporter, ATPase/permease fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
0.980
PP_0870
Putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.936
cbcW
Choline / betaine / carnitine ABC transporter - membrane subunit; Function experimentally demonstrated in the studied genus; transporter.
  
 
 
0.909
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.