STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3563Homologs of previously reported genes of unknown function. (283 aa)    
Predicted Functional Partners:
PP_3562
Homologs of previously reported genes of unknown function.
 
   
 0.771
PP_3397
Homologs of previously reported genes of unknown function.
 
   
 0.479
algP
Transcriptional regulatory protein AlgP.
  
    0.474
PP_0781
Homologs of previously reported genes of unknown function.
  
    0.474
PP_1449
Homologs of previously reported genes of unknown function.
  
    0.474
PP_4226
Homologs of previously reported genes of unknown function.
  
    0.474
PP_4858
Homologs of previously reported genes of unknown function.
  
    0.474
PP_3561
Homologs of previously reported genes of unknown function.
       0.440
PP_0617
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.416
livM
Branched chain amino acid transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Pyruvate family; Belongs to the binding-protein-dependent transport system permease family.
   
   0.416
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.