Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3564Transcriptional regulator, AraC family. (325 aa)    
Predicted Functional Partners:
PP_2383
Transcriptional regulator, AraC family.
  
   0.713
PP_4605
Transcriptional regulator, AraC family.
  
   0.711
PP_3640
Transcriptional regulator, AraC family.
  
   0.661
PP_4511
Transcriptional regulator, AraC family.
  
   0.644
PP_3565
Transporter, LysE family.
 
    0.621
PP_1711
Transcriptional regulator, AraC family.
  
   0.597
PP_2425
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
   0.577
PP_1395
Transcriptional regulator, AraC family.
  
   0.546
PP_2960
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator; Regulatory functions.
  
   0.488
PP_4602
Transcriptional regulator, AraC family.
  
   0.477
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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