STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprB-IIICarbohydrate-selective porin; Function of strongly homologous gene; transporter; Transport and binding proteins. (422 aa)    
Predicted Functional Partners:
quiA
Quinate dehydrogenase (quinone); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
     0.712
oprB-II
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
  
  
 
0.640
oprB-I
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
  
  
 
0.632
oprF
Outer membrane porin F.
     
 0.625
PP_4770
Homologs of previously reported genes of unknown function.
  
     0.580
PP_2565
Putative helicase, UvrD/REP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; DNA metabolism.
  
     0.546
PP_0693
Homologs of previously reported genes of unknown function.
  
     0.507
PP_1264
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.504
PP_0176
Putative efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.474
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
  
     0.471
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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