Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_3574Homologs of previously reported genes of unknown function. (130 aa)    
Predicted Functional Partners:
PP_3573
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    0.981
PP_3572
Homologs of previously reported genes of unknown function.
 
     0.918
PP_3571
Putative Acetylornithine deacetylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.787
PP_2574
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.782
PP_2247
Putative Endoribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.573
PP_4435
Homologs of previously reported genes of unknown function.
 
   
 0.559
PP_3496
Endoribonuclease L-PSP.
  
   
 0.454
PP_1925
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.438
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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