Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fecIRNA polymerase, sigma 19 factor; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)    
Predicted Functional Partners:
PP_3576
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   0.964
pvdS
Alternative sigma factor; Function experimentally demonstrated in the studied genus; regulator; Regulatory functions; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.962
fecA
Outer membrane ferric citrate porin; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Porins.
  
  
 0.956
PP_3575
Outer membrane ferric siderophore receptor.
 
  
 0.860
PP_3085
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   0.840
PP_0700
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.834
rseP
Regulatory intramembrane protein RIP zinc protease; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Regulatoryfunctions : Protein interactions.
   
  
 0.831
PP_0161
Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.829
PP_0668
Putative Transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.826
PP_4612
Putative FecR protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.826
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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