STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3595Amino acid ABC transporter, membrane protein; Function experimentally demonstrated in the studied strain; transporter. (236 aa)    
Predicted Functional Partners:
PP_3597
Amino-acid ABC transporter, ATP-binding protein; Function experimentally demonstrated in the studied strain; transporter.
 
 0.991
PP_3594
Amino acid ABC transporter, membrane protein; Function experimentally demonstrated in the studied strain; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
 
 
0.988
fliY
Periplasmic cystine-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Serine family.
  
 0.977
PP_5024
Amino acid ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
  
 0.942
argT
Lysine / arginine / ornithine ABC transporter - periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
 0.925
PP_3593
Amino acid ABC transporter, periplasmic binding protein; Function experimentally demonstrated in the studied strain; transporter; Transportandbindingproteins : Amino acids, peptides and amines; Belongs to the bacterial solute-binding protein 3 family.
  
 0.923
artJ
L-arginine ABC transporter - periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Glutamate family.
  
 0.889
hisP
Histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
 0.850
aotP
Arginine/ornithine transport ATP-binding protein AotP.
  
 0.847
PP_0657
Putative Amino acid ABC transporter, periplasmic amino acid-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 3 family.
  
 0.781
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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